Test it in a Sandbox or something to double-check me, but I don't think there's necessarily any adverse effects in the short-term to just uncheck the Use Bins box.
Uncheck Use Bins for the affected items, do your transaction, then recheck Use Bins.
If you're doing some high transaction volume or automation where several hundred transactions might get messed up in the five minutes you have Use Bins off, then I probably wouldn't go that route.